Sequence
atgc intronic sequence ATGC exonic sequenceTCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCTAGAGACTATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGgtagcctaaaatatgtctgctttgtcaatgtatccaggagttatgaaaatgttaacttggtgttaaaacatgtgttcttgttggcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G59110.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 5
TCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCTAGAGACTATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGgtagcc--------taaaatatgtctgctt--------tgtcaatgtat----ccaggagttatgaaaa--tgttaacttggtgttaaaacat-----gtgttcttgttggcag
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TTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTGCTGGAAGCAGTTACTGGAAGGGACCCTGTAGACTATGCGCGTCCTGCTAATGAGgtggctaatttttatgaactctacctgcttgccagttctaaccatgctttccaccagaagtgatcactgcctttcaaatagctgatgagatattgtttatcttcattatgacag
upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 7
TCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCTAGAGACTATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGgtagcctaaaatatgtctgctttgtcaatgtatccaggagttatgaaaatgttaacttggtgttaaaacatgtgttcttgttggcag------------------------
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TTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTACTGGAAGCAGTTACTGGAAGGGATCCTGTAGACTATGCGCGCCCTGCTAATGAGgt-gcctaattcttatgaactctgccagcttg-ccagttctaaccatactttccactggaagtcatcac-tgtgtttcaaatagctgatgagataatcttcattatgacag
upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
TCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCTAGAGACTATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGgta-------gcctaaaatat----gtctgctttgtcaatgtatccaggagt-----tatgaaaatgttaacttggtgttaaaacatg-tgttcttgttggcag---
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CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124990525|gb|EL062794.1|EL062794EST: TATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAG GTGAATCTGGTCGAATGGCTAAAGATGATGGTTGGAACAAGAAGAG
genomic: TATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGgtagcctaaa ... ttgttggcagGTGAATCTGGTCGAATGGCTAAAGATGATGGTTGGAACAAGAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCTAGAGACTATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGgtagcctaaaatatgtctgctttgtcaatgtatccaggagttatgaaaatgttaacttggtgttaaaacatgtgttcttgttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC