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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGTTGGTACTGCGCAGGCgtaagttgtttaaaatgtgactgttgttggaccttttacttgaaatttcaaaaacaactctttaaggggatattgacatgctctgtactacaattttacag

Basic information

species Arabidopsis thaliana
transcript AT3G59110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 3
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGTTGGTACTGCGCAGGCgtaagtt--gtttaaaatgtgactgttgttgg-accttttacttgaaatttcaaaaacaactctttaaggggatattgacatgctctgtactacaattttacag
  | ||||||||||||||||||||||||||| || ||| |  ||||| | || || || ||||| ||||| |||||| |  |   ||| || ||  | |||||||||    || |||  |       |  |  | | |||| | |  || |  |      |    |  |   ||||  |       |||  |  |    |    
-CAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGAATGAAAGTTATAACTGGAACAGCCAAAGCGtaagttctacttgaaaaattcaaacagaggacaacatttattagttatgttgacttgtgcaaaattggtttatatgaattgtgattgtcttgaatccctt---

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 3
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGTTGGTACTGCGCAGGCgtaagttgtttaaaatgtgactgttgttggaccttttacttgaaatttcaaaaacaactctttaaggggatattgacatgctctgtactacaattttacag-------
| | ||||||||||||||||||||||||||| || ||| |  ||||| | || || || ||||| || || |||||| |  |   ||| || ||  | ||||||||| |   | |    | |      |        | ||   ||||  |     |||  |    |  | ||||   || | | ||||   ||| |   |       
ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaa-aattcaaacagaggacaacatttattattt--atgttgacttgt----gcaaaattggtttgtt-tatactgtgattgtcttgaatccct

upper sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 3
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGTTGGTACTGCGCAGGCgtaagtt---------gtttaaaatgtg-actgttgttggaccttttacttgaaatt-tcaaaaacaactctttaaggggatattgacatgctctgtactacaattttacag
| | ||||||||||||||||||| ||||||||| ||||    || |  | || || || |||||||| ||||||||| |  |  |||| |||||  | |||||||||           ||||||| |  ||  | ||   | |||||   | |  |  |   |||  ||||  ||     ||  | |    |||    ||            
ACAATGGTAACTTAGAACAATGGTTACATGGAGACATGCATCAATATGGAACACTTACCTGGGAGGCCCGCATGAAAGTTATACTTGGCACTGCCAAAGCgtaagttcagggtgcaacttaaaatatataccatggt--aatcttttgtataatctggtgccaaatcactcggtataattatcataaatctctcatctctga----------