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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatctttcccaaaaatggaaaacagatgcacagaatcgtgaaaggcagacttcaattttaattagaatggcaacatatgcgtagacatcatacctttgtgaccattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAGCAGCAACGTAGAAGACTGGATCCTGCATCAAGTGAACCGTTGTTTACCA

Basic information

species Arabidopsis thaliana
transcript AT3G58560.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164230873|gb|ES101499.1|ES101499
EST:     CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTG                         GTTAGTGCCTACTCACAATTTGCAAAAATGGGA
genomic: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatct ... accattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGA
EST: gi|116428969|gb|EG471561.1|EG471561
EST:     CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTG                         GTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAG
genomic: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatct ... accattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAG
EST: gi|86059624|gb|DR355381.1|DR355381
EST:     CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTG                         GTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAG
genomic: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatct ... accattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaattagaatggcaacatatgcgtagacatcatacctttgtgaccattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAGCAGCAACGTAGAAGACTGGATCCTGCATCAAGTGAACCGTTGTTTACCA
 ttttaat  putative branch site (score: 3)
     attagaat  TA-rich tract