1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTACACCTTACGTACTTCTCCGGCGGCCTGATAAGACCCCCTCCACCGATGATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatgcctgtggcttccttttactcttaaatctgctcccttttactagcttttgctcgagtttgttatggacgacttttttttaccgaaagtttg...
species | Arabidopsis thaliana |
transcript | AT3G58560.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATG GTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATCEST: gi|116485051|gb|EG527643.1|EG527643
genomic: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatg ... tctgttgcagGTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATC
EST: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATG GTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATCEST: gi|86073159|gb|DR368916.1|DR368916
genomic: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatg ... tctgttgcagGTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATC
EST: TGTGCCTGGAGTCAGCCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATG GTTTCGAGTACAGAGNGGATAAGAAAGTTGCGATTTGTAGTGEST: gi|116477303|gb|EG519895.1|EG519895
genomic: TGTGCCTG-AGTCAGCCCC-GCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatg ... tctgttgcagGTTTCGAGTACAGAGTG-ATAAGAAAGTTGCGATTTGTAGTG
EST: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATG GTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATCEST: gi|86073160|gb|DR368917.1|DR368917
genomic: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatg ... tctgttgcagGTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATC
EST: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATG GTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATCEST: gi|86073162|gb|DR368919.1|DR368919
genomic: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatg ... tctgttgcagGTTTCGAGTACAGAGTGATAAGAAAGTTGCGATTTGTAGTGTGCATCCATC
EST: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATG GTTTCCGAGTACAGAGTGATAAAGAAAGTTGCGATTTTGTAGTGEST: gi|86073161|gb|DR368918.1|DR368918
genomic: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatg ... tctgttgcagGTTTC-GAGTACAGAGTGATAA-GAAAGTTGCGATTT-GTAGTG
EST: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATG GGGTTCGAGTACAGAG
genomic: GATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatg ... tctgttgcagGT-TTCGAGTACAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACACCTTACGTACTTCTCCGGCGGCCTGATAAGACCCCCTCCACCGATGATGTGCCTGAGTCAGCCCCGCTTGAAGGTCACTTCTTAAAGTACAGATGgtaagtcatgcctgtggcttccttttactcttaaatctgctcccttttactagcttttgctcgagtttgttatggacgacttttttttaccgaaagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccttt