1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCACACATTATTGAAGGGACTGGAGAAAATAGCTGCCAGTGCAGATATTCCAATGCTTGTGTGTGGAGATTTCAACACAGTACCTGCGAGgtctggctggttttcctatttgttatgcccaagtagcaattgtcaaactctatattaaattatgattgtggtttctacctgaattaacttggagttccttcttaatattttcag
species | Arabidopsis thaliana |
transcript | AT3G58560.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAATGCTTGTGTGTGGAGATTTCAACACAGTACCTGCGAG TGCTCCTCATACACTTCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGAEST: gi|116428969|gb|EG471561.1|EG471561
genomic: CAATGCTTGTGTGTGGAGATTTCAACACAGTACCTGCGAGgtctggctgg ... atattttcagTGCTCCTCATACACTTCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGA
EST: GCAGATATTCCAATGCTTGTGTGTGGAGATTTCAACACAGTACCTGCGAG TGCTCCTCATACACTTCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGAEST: gi|86059624|gb|DR355381.1|DR355381
genomic: GCAGATATTCCAATGCTTGTGTGTGGAGATTTCAACACAGTACCTGCGAGgtctggctgg ... atattttcagTGCTCCTCATACACTTCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGA
EST: ACACAGTACCTGCGAG TGCTCCTCATACACTTCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGA
genomic: ACACAGTACCTGCGAGgtctggctgg ... atattttcagTGCTCCTCATACACTTCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCACACATTATTGAAGGGACTGGAGAAAATAGCTGCCAGTGCAGATATTCCAATGCTTGTGTGTGGAGATTTCAACACAGTACCTGCGAGgtctggctggttttcctatttgttatgcccaagtagcaattgtcaaactctatattaaattatgattgtggtttctacctgaattaacttggagttccttcttaatattttcag
- - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT