1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGAGTTCAACAAGGCTGCACAGTCTTTGACTGAGGCTATTATCCCTGTTTCCCAGAAGAAAAATGCTTTGAATCGGTTGGTCAAGgtactctgagatgctctatagtatgatttctgttttccgcacattcttggtgatattttttcatgtaaaactgatttagagtctttctttttag
species | Arabidopsis thaliana |
transcript | AT3G58560.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCGGTTGGTCAAG GATAATGTTGCTTTAATAGTTGTACTGGAAGCAAAATTCGGTAGCCAGGCTEST: gi|164062301|gb|ES179963.1|ES179963
genomic: TCGGTTGGTCAAGgtactctgag ... ttctttttagGATAATGTTGCTTTAATAGTTGTACTGGAAGCAAAATTCGGTAGCCAGGCT
EST: GAAAAATGCTTTGAATCGGTTGGTCAAG GATAATGTTGCTTTAATAGTTGTACTGGAAGCAAAATTCGGTAGCCAGGCTEST: gi|116428969|gb|EG471561.1|EG471561
genomic: GAAAAATGCTTTGAATCGGTTGGTCAAGgtactctgag ... ttctttttagGATAATGTTGCTTTAATAGTTGTACTGGAAGCAAAATTCGGTAGCCAGGCT
EST: TCGGTTGGTCAAG GATAATGTTGCTTTAATAGTTGTACTGGAAGCAAAATTCGGTAGCCAGGCT
genomic: TCGGTTGGTCAAGgtactctgag ... ttctttttagGATAATGTTGCTTTAATAGTTGTACTGGAAGCAAAATTCGGTAGCCAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGTTCAACAAGGCTGCACAGTCTTTGACTGAGGCTATTATCCCTGTTTCCCAGAAGAAAAATGCTTTGAATCGGTTGGTCAAGgtactctgagatgctctatagtatgatttctgttttccgcacattcttggtgatattttttcatgtaaaactgatttagagtctttctttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA