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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaacttaaaattgcacatccttcattgtgatatatattctagcaataagtacatttaaattgatctttttgcctccttatttttctgtag

Basic information

species Arabidopsis thaliana
transcript AT3G57440.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116376699|gb|EG419291.1|EG419291
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376700|gb|EG419292.1|EG419292
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376703|gb|EG419295.1|EG419295
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376690|gb|EG419282.1|EG419282
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376705|gb|EG419297.1|EG419297
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376701|gb|EG419293.1|EG419293
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376696|gb|EG419288.1|EG419288
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376698|gb|EG419290.1|EG419290
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376704|gb|EG419296.1|EG419296
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376702|gb|EG419294.1|EG419294
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376707|gb|EG419299.1|EG419299
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaacttaaaattgcacatccttcattgtgatatatattctagcaataagtacatttaaattgatctttttgcctccttatttttctgtag

- - - - - - - - - - TGAAGA
- - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - GGAAGA