1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAAAGACATCTTGGAGTTTCTTTCCTCTGAATCTTCTTCAGAAGTTCACATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactcttcttctcattcatacaacagcaacaacacatacacacatttgttacaattttatccatgatttaggtttcatttcttagttaagcatgcaatacatcttcaagcctcttatgcatgttgggtttaatggaagatagttagagacttctagtactgatcaaatcctgatgcag
species | Arabidopsis thaliana |
transcript | AT3G57440.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376700|gb|EG419292.1|EG419292
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376703|gb|EG419295.1|EG419295
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376690|gb|EG419282.1|EG419282
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376705|gb|EG419297.1|EG419297
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376701|gb|EG419293.1|EG419293
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376696|gb|EG419288.1|EG419288
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376698|gb|EG419290.1|EG419290
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376704|gb|EG419296.1|EG419296
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376702|gb|EG419294.1|EG419294
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGAEST: gi|116376707|gb|EG419299.1|EG419299
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
EST: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAAT GTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
genomic: ATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactctt ... cctgatgcagGTTGTTGAAGATGGAGGAAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAGACATCTTGGAGTTTCTTTCCTCTGAATCTTCTTCAGAAGTTCACATCCGTCAGATTCTTGGCGACAGTCCCGATACCAGCAAAGCTCTCAGAATgtatactcttcttctcattcatacaacagcaacaacacatacacacatttgttacaattttatccatgatttaggtttcatttcttagttaagcatgcaatacatcttcaagcctcttatgcatgttgggtttaatggaagatagttagagacttctagtactgatcaaatcctgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG