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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaacttaaaattgcacatccttcattgtgatatatattctagcaataagtacatttaaattgatctttttgcctccttatttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATCCCCTTTCCCACTATCTAGTTATATACAGTTTGGTTTGATCCTGATATGG

Basic information

species Arabidopsis thaliana
transcript AT3G57440.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116376699|gb|EG419291.1|EG419291
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376700|gb|EG419292.1|EG419292
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376703|gb|EG419295.1|EG419295
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376690|gb|EG419282.1|EG419282
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376705|gb|EG419297.1|EG419297
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376701|gb|EG419293.1|EG419293
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376696|gb|EG419288.1|EG419288
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376698|gb|EG419290.1|EG419290
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376704|gb|EG419296.1|EG419296
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376702|gb|EG419294.1|EG419294
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
EST: gi|116376707|gb|EG419299.1|EG419299
EST:     AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAG                         ATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC
genomic: AAGTGAAGAGGTTTGGCACAGGAGGAAGACTTGATCCCTTTATTTACAAGgtatgaaact ... ttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctagcaataagtacatttaaattgatctttttgcctccttatttttctgtagATTGCATGAAAGATTAAGACATTAATGCTGGAGGCAGGTAACACTTATATCCCCTTTCCCACTATCTAGTTATATACAGTTTGGTTTGATCCTGATATGG
                      aattgat  putative branch site (score: 4)
                        ttgatctttttgcctc  CT-rich tract
        aataagtacatttaaa  TA-rich tract