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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTGAAACTTCTCAGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAAAGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGgtgccctcacatctcttttctttcaaccctcttttatctccctgagatgtttgctctttatactgatgttgcattgtgttttgctactcttcctacag

Basic information

species Arabidopsis thaliana
transcript AT3G50670.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50670.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os10g02630.1 (Oryza sativa), 5'ss of exon 7
TCTTCTGAAACTTCTCAGGTTCATTTGGTGACTGATCAGCTGACCAATAAACCCAAAGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGgtgccctcacatctcttttctttcaaccctcttttatctccctgagatgtttgctctttatactgatgttgcattgtgttttgctactcttcctacag-------------
                  || |   | ||||| ||  ||   || |||||||| | ||||||||| ||||| ||||| ||||||||||| ||||||||| ||      |    |||  | |  ||   ||| | |||       |    ||||   |    |||||||  |   ||| ||    |     | |||                
------------------GTACGGCTTGTGACCGACAAGGAAACAAATAAACCTAGAGGATATGCATTCATCGAGTATATGCACACCCGGGACATGAAAAgta-----aagcttctggtttagcatatctcctctatacagtccaa---tttggcgtcatcactgatgaagtgctgtcttacattttctctgctaatatgtgttctcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831688|gb|CK121372.1|CK121372
EST:     ACCCAAAGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAG                         CTGCATATAAGCAAGCTGATGGACAAAAGATTGACGGCAGAAGAGTTTTGG
genomic: ACCCAAAGGATATGCTTTCATTGAGTACATGCACACCCGTGACATGAAAGgtgccctcac ... cttcctacagCTGCATATAAGCAAGCTGATGGACAAAAGATTGACGGCAGAAGAGTTTTGG