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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctgtgtttctttttttcttactgttgaatgacttttgttagacatctgagttatgttgtgcttaactttggtctgttcttgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGACCAATTAAACGGGTAGGTTATTCTGAGCATTCCCTTGCTGGTTCGGTAA

Basic information

species Arabidopsis thaliana
transcript AT3G50670.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116473966|gb|EG516558.1|EG516558
EST:     ATCCAAATGCTACTGGAGATCCATACAAGACATCGTTCGTTTCAAGACTT                         AACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATTTTATGGA
genomic: ATCCAAATGCTACTGGAGATCCATACAAGACATTGTTCGTTTCAAGACTTgtaagctgtg ... tgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGA
EST: gi|116473967|gb|EG516559.1|EG516559
EST:     ATCCAAATGCTACTGGAGATCCATACAAGACATCGTTCGTTTCAAGACTT                         AACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGA
genomic: ATCCAAATGCTACTGGAGATCCATACAAGACATTGTTCGTTTCAAGACTTgtaagctgtg ... tgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGA
EST: gi|164227264|gb|EL970919.1|EL970919
EST:     AAGACATTGTTCGTTTCAAGACTT                         AACTACGAATCCTCAGAGAATAAGATTAAAAGGGA
genomic: AAGACATTGTTCGTTTCAAGACTTgtaagctgtg ... tgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttagacatctgagttatgttgtgcttaactttggtctgttcttgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGACCAATTAAACGGGTAGGTTATTCTGAGCATTCCCTTGCTGGTTCGGTAA
                         gcttaac  putative branch site (score: 3)
                                     tctgttcttgtctt  putative PPT
                           ttaacttt  TA-rich tract