1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGTTCGTTTCAAGACTTgtaagctgtgtttctttttttcttactgttgaatgacttttgttagacatctgagttatgttgtgcttaactttggtctgttcttgtcttgcag
species | Arabidopsis thaliana |
transcript | AT3G50670.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCCAAATGCTACTGGAGATCCATACAAGACATCGTTCGTTTCAAGACTT AACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATTTTATGGAEST: gi|116473967|gb|EG516559.1|EG516559
genomic: ATCCAAATGCTACTGGAGATCCATACAAGACATTGTTCGTTTCAAGACTTgtaagctgtg ... tgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGA
EST: ATCCAAATGCTACTGGAGATCCATACAAGACATCGTTCGTTTCAAGACTT AACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGAEST: gi|164227264|gb|EL970919.1|EL970919
genomic: ATCCAAATGCTACTGGAGATCCATACAAGACATTGTTCGTTTCAAGACTTgtaagctgtg ... tgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGAGTTTGAATCTTATGGA
EST: AAGACATTGTTCGTTTCAAGACTT AACTACGAATCCTCAGAGAATAAGATTAAAAGGGA
genomic: AAGACATTGTTCGTTTCAAGACTTgtaagctgtg ... tgtcttgcagAACTACGAATCCTCAGAGAGTAAGATTAAAAGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGTTCGTTTCAAGACTTgtaagctgtgtttctttttttcttactgttgaatgacttttgttagacatctgagttatgttgtgcttaactttggtctgttcttgtcttgcag
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - GAGATC