1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCGCAGAAAAGGGAAAGAATTCATAAATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATgtaatctactatatgttatttgtgttccttttaatgccctcttaggtttgagaattcttagttaatttgttttttttttatatgcag
species | Arabidopsis thaliana |
transcript | AT3G50670.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGAAAGGTGTTGAAAAGGCTGCTTGAGGACTTAAAGAAAT ATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGTEST: gi|116473966|gb|EG516558.1|EG516558
genomic: GGAGAAAGGTGTTGAAAAGGCTGC-TGAGGACTTAAAGAAATgtaatctact ... ttatatgcagATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGT
EST: ATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAAT ATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATCGTEST: gi|116473967|gb|EG516559.1|EG516559
genomic: ATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATgtaatctact ... ttatatgcagATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGT
EST: ATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAAT ATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATCGTEST: gi|163977429|gb|ES119787.1|ES119787
genomic: ATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATgtaatctact ... ttatatgcagATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGT
EST: ATTGCGACTGGAGAAAGGTGTTG-AAAGGCTGCTGAGGACTTAAAGAAAT ATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACAEST: gi|164122182|gb|ES188361.1|ES188361
genomic: ATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATgtaatctact ... ttatatgcagATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACA
EST: GGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAAT ATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGTEST: gi|164161859|gb|ES161427.1|ES161427
genomic: GGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATgtaatctact ... ttatatgcagATGACCCCAATAATGATCCAAATGCTACTGGAGATCCATACAAGACATTGT
EST: ATTGCGACTGGAGAAAGGTGTTG-AAAGGCTGCTGAGGACTTAAAGAAAT ATGACCCCAAATAATGATCCAAATGCTACTGGAGATCCATACAAGACA
genomic: ATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATgtaatctact ... ttatatgcagATGACCCC-AATAATGATCCAAATGCTACTGGAGATCCATACAAGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCAGAAAAGGGAAAGAATTCATAAATTGCGACTGGAGAAAGGTGTTGAAAAGGCTGCTGAGGACTTAAAGAAATgtaatctactatatgttatttgtgttccttttaatgccctcttaggtttgagaattcttagttaatttgttttttttttatatgcag
- - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA