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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcatataactctaattttggaaattactgtttgatctcaagtgagagtgtaaatctgctatttatttcccctgaatctcatatttttcttttttgaagCCTACTACTGTTGATTATATAACTAGAGACACTGGAAATTCCAGCCCGCGTTACATGCGATGCACAATCAATCAG

Basic information

species Arabidopsis thaliana
transcript AT3G44340.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116438543|gb|EG481135.1|EG481135
EST:     GTCCAATTGTGTATGAAACTCGTGTGGAAAATAAGGCTAATCCTCCACCA                         CCTACTACTGTTGATTATATAACTAGAGACACTGGAAATTCCAGCCCGC
genomic: GTCCAATTGTGTATGAAACTCGTGTGGAAAATAAGGCTAATCCTCCACCAgtatgtcata ... ttttttgaagCCTACTACTGTTGATTATATAACTAGAGACACTGGAAATTCCAGCCCGC
EST: gi|116471784|gb|EG514376.1|EG514376
EST:     GTCCAATTGTGTATGAAACTCGTGTGGAAAATAAGGCTAATCCTCCACCA                         CCTACTACTGTTGATTACATAACTAGAGACACTGGAAATTCCAGCCCGC
genomic: GTCCAATTGTGTATGAAACTCGTGTGGAAAATAAGGCTAATCCTCCACCAgtatgtcata ... ttttttgaagCCTACTACTGTTGATTATATAACTAGAGACACTGGAAATTCCAGCCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtgtaaatctgctatttatttcccctgaatctcatatttttcttttttgaagCCTACTACTGTTGATTATATAACTAGAGACACTGGAAATTCCAGCCCGCGTTACATGCGATGCACAATCAATCAG
                                tctcatatttttcttt  CT-rich tract
                              aatctcatatttttct  TA-rich tract