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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttttgtggcagagagctctgtccaagtcaaatttcagcttgaggttatttgataaataccacttttgtcgattattgtagGGTATTCAAGTGCAAGAATACTCAGGGAACTTCTGTAAGCGCATACCAACTGACATCGATCTACCTGCG

Basic information

species Arabidopsis thaliana
transcript AT3G44340.2
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G44340.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA10G42720.1 (Glycine max), 3'ss of exon 17
gtaatgttttgtggcagagagctctgtccaagtcaaatttcagcttgaggttatttgataaataccacttttgtcgattattgtagGGTATTCAAGTGCAAGAATACTCAGGGAACTTCTGTAAGCGCATACCAACTGACATCGATCTACCTGCG
||| ||| || ||    |      |  | |   |   |  ||            |   ||| |  |  ||||||   ||  |  |||||||||||||||| |||||||  || ||||||||||| ||||| ||||||||  | || ||||||| |
gtagtgtgtt-tgtttcactttctttgctaccccctgtcacacaacatataggctctgtaattttcgtttttgttcttttgt-cagGGTATTCAAGTGCAGGAATACTATGGCAACTTCTGTAAACGCATCCCAACTGATGTTGACCTACCTGGG

upper sequence: AT3G44340.1 (Arabidopsis thaliana), 3'ss of exon 17
lower sequence: GLYMA20G24330.1 (Glycine max), 3'ss of exon 17
gtaatgttttgtggcagagagctctgtccaagtcaaatttcagcttgaggttatttgataaataccacttttgtcgattattgtagGGTATTCAAGTGCAAGAATACTCAGGGAACTTCTGTAAGCGCATACCAACTGACATCGATCTACCTGCG
    |  | |||  ||     || || | |  |       || | |   |    |    || |  || ||||||   || |   ||||||| |||||||| |||||||  || ||||||||||| ||||| ||||||||  | || ||||| | |
---gtagtctgtttcacttt-ctttg-ctaccttgtcacacaacatatag--gctctgcaattttcatttttgttcttt-tgccagGGTATCCAAGTGCAGGAATACTATGGCAACTTCTGTAAACGCATTCCAACTGATGTTGACCTACCCGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaaatttcagcttgaggttatttgataaataccacttttgtcgattattgtagGGTATTCAAGTGCAAGAATACTCAGGGAACTTCTGTAAGCGCATACCAACTGACATCGATCTACCTGCG
                     atttgat  putative branch site (score: 5)
                   ttatttgataaata  TA-rich tract