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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaaacaaaatctcactatctatcttctttttttttgtctcctggaatgattaccgttctaaccttataaaattattcgtgttcgttcttttgcagCATTAAATTGTGCAAGAAAGGAGATCCAGCTGGTGAGTTAATTTTTTTAATGAACCATTGATCACTTTCGGTTCAGCAGAGATTGATCAATCTTGTAATC

Basic information

species Arabidopsis thaliana
transcript AT3G44340.2
intron # 24
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124783061|gb|EH872955.1|EH872955
EST:     GTGGTGAATGAAATAAGGAGGCAAAGAAGTTCTTACCTACG                         CATTAAATTGTGCAAGAAAGGAGATCCAGCTGG
genomic: GTGGTGAATGAAATAAGGAGGCAAAGAAGTTCTTACCTACGgtatcaaaca ... tcttttgcagCATTAAATTGTGCAAGAAAGGAGATCCAGCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggaatgattaccgttctaaccttataaaattattcgtgttcgttcttttgcagCATTAAATTGTGCAAGAAAGGAGATCCAGCTGGTGAGTTAATTTTTTTAATGAACCATTGATCACTTTCGGTTCAGCAGAGATTGATCAATCTTGTAATC
               ttctaac  putative branch site (score: 1)
                                        ttcgttctttt  putative PPT
               ttctaaccttataaaa  TA-rich tract