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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGCCATTTGCTTGAACAGTGTTGGTTCTTGGGACAGTGAACTATTGATCCATGTGTCAAAGCCTCCGGATAATGCCTATATAAAACAAATTTTTGAGgtaaacaaaatagtgcatggattattgcagtgactagctatgatgatagtttattggttaatggattcgtctctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G44330.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G44330.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os08g01180.1 (Oryza sativa), 5'ss of exon 7
TTATGCCATTTGCTTGAACAGTGTTGGTTCTTGGGACAGTGAACTATTGATCCATGTGTCAAAGCCTCCGGATAATGCCTATATAAAACAAATTTTTGAGgtaaacaaaatagtgcatggat-------tattgcagtgactagctat----gatgatagtttattggttaatggattcgtct--ctgcag
 ||||| |||||||||||||| |||||||| ||||||| |||||| | ||| |||||||||||||| || || ||  |||| || |||||||| ||||| |||     |  | | || | ||        ||  |||| | ||| | |    |    |   || |       || |||| | |   | |||
CTATGCAATTTGCTTGAACAGCGTTGGTTCCTGGGACAATGAACTCTGGATGCATGTGTCAAAGCCACCAGAAAACCCCTACATTAAACAAATCTTTGAAgtatgttgaccatttcaagcatgttggtgcataacagttattagttgtcaagggcagtcacttttacacctctgaattcttttgctttcag

upper sequence: AT3G44330.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G451366_T02 (Zea mays), 5'ss of exon 7
TTATGCCATTTGCTTGAACAGTGTTGGTTCTTGGGACAGTGAACTATTGATCCATGTGTCAAAGCCTCCGGATAATGCCTATATAAAACAAATTTTTGAGgtaaacaaaatagtgca-------tggattattgcagtgactagcta--tgatgatagtt-tattggt--taatggattcgtct--ctgcag
 ||||| ||||||||||||||||||||||| |||  || ||| || | ||| ||||| ||||||||||| || ||| ||||||| || ||||| ||||| |||    ||  | |  |       |||    |  |  |   || ||   | ||||||||  ||||| |     || |||  | |   | |||
CTATGCAATTTGCTTGAACAGTGTTGGTTCCTGGAGCAATGACCTCTGGATGCATGTATCAAAGCCTCCAGAAAATCCCTATATCAAGCAAATCTTTGAAgtatgttaatcatttgaagcttgttggtccttaacccttgttatctgggtaatgatagtcatattgatatctgtgaatttatttgctttcag

upper sequence: AT3G44330.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G021784_T01 (Zea mays), 5'ss of exon 7
TTATGCCATTTGCTTGAACAGTGTTGGTTCTTGGGACAGTGAACTATTGATCCATGTGTCAAAGCCTCCGGATAATGCCTATATAAAACAAATTTTTGAGgtaaacaaaatagtgca-------tggattattgcagtgactagctatgatgatagtt-tattggt--taatggattcgtct--ctgcag
 || || ||||||||||||| ||||||||| |||| || ||| || | ||| ||||| ||||||||||| || ||| ||||||| || ||||| ||| | |||     |  | |  |       |||  |||  |  |  ||| || | | ||||||  ||||| |     || |||  | |   | |||
CTACGCAATTTGCTTGAACAATGTTGGTTCCTGGGGCAATGACCTCTGGATGCATGTATCAAAGCCTCCAGAAAATCCCTATATCAAGCAAATCTTTAAAgtatgttgatcatttgaagcttgttggtctataaccttagctatctgtaaggatagtcatattgatatctgtgaatttatttgctttcag

upper sequence: AT3G44330.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G09710.1 (Glycine max), 5'ss of exon 7
TTATGCCATTTGCTTGAACAGTGTTGGTTCTTGGGACAGTGAACTATTGATCCATGTGTCAAAGCCTCCGGATAATGCCTATATAAAACAAATTTTTGAGgtaaa--------caaaatagtgcatggattattgca-gtgactagctatgatgatag-tttattggttaatggattcgtctctgcag
 ||||| ||||||||| | ||| |||| |||||||| | |||| | | ||| |||||||| ||||||||||| ||||||| ||| ||  |||||  ||| ||||         |||| | ||||| |  ||| |  | |    |   ||   |  ||  || ||   ||||||||        || ||
CTATGCTATTTGCTTGGATAGTATTGGCTCTTGGGAAAATGAATTGTGGATTCATGTGTCTAAGCCTCCGGAAAATGCCTTTATTAAGAAAATTCATGAAgtaagtgagtagtcaaagtggtgcaggctttactaaatggagtttcttacagttttatcttcatgacttaatggaa--aatattgtag