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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatatgagtagtggatcttcttaccgtaatatcaagtacatacctgacaaacttgtatatgtagGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTGGCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G44330.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G44330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G021784_T01 (Zea mays), 3'ss of exon 5
gtatgta-atatgagtagt----ggat-cttcttaccgtaatatcaagtacatacctgacaaacttgtatatgt--agGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTGGCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAG
||||||  ||   |||  |    | ||  || |||  ||  |   |  |     | ||   ||| || || |    ||||| | || || ||||| ||||||||||||||||| |||||||| ||||| ||  | || ||| |||||||   |||||| |||||||| ||||| || |
gtatgtttatccaagtgttcccagaatgtttgttaaagttcttctagatgt---cttggataacgtggattttctcagGCACTTTCTGTGGGAAGCGACAGCAATGGAAGTGGAGTTGTGGCTCTTCTAGAGATTGCGAGACTATTTTCACGTCTGTATTCAAATCCTAAGACAAGGG

upper sequence: AT3G44330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G451366_T02 (Zea mays), 3'ss of exon 5
------gtatgtaatatgagtagtggatcttcttaccgtaatatcaagtacatacctgacaaacttg-tatatgtagGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTGGCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAG
       |||  || | | ||   | |   |  |    |  | |     |  |  | || ||  | | | |    ||||| | ||  | ||||| ||||||||||||||||| |||||||| ||||| ||  | || ||| |||||||   | |||| |||||||| ||||| || |
gtatgtttatccaaaaagtgttccgtaatgttctctaatgttcttgtagatgtctccgataacgtggattttctcagGCACTTTCTCTGGGAAGCGACAGCAATGGAAGTGGAGTTGTGGCTCTTCTAGAGATTGCAAGACTATTTTCACGTTTGTATTCAAATCCTAAGACAAGGG

upper sequence: AT3G44330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA11G18710.1 (Glycine max), 3'ss of exon 5
gtatgtaatatgagtagtggatct-tcttaccgtaatatcaagtacatac-------ctgacaaacttgtatatgtagGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTGGCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAG
|||||| || |  | | |  | || |   |||  | | |     |  ||        || | | |  ||||  |||||||||||||||| ||||| || || |||||||||||  ||||||| ||||||||||| ||||| || |||||  |  | || || ||||| ||||| ||||
gtatgttatttatgaattctacctataaaaccaaactgtttgaaatgtatgattatgctaaaatatatgtaattgtagGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAGACAAGAG

upper sequence: AT3G44330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA12G09710.1 (Glycine max), 3'ss of exon 5
gtatgtaatatgagtagtggatcttcttaccgtaa---tatcaagtacatacctg-----acaaacttgtatatgtagGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTGGCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAG
|||||| || |  | | |  | ||    | |  ||   | | || | |||   |      | | |  ||||  || ||||||||||||| ||||| || || |||||||||||  ||||||| ||||||||||| ||||| || |||||  |  | || || ||||| ||||| ||||
gtatgttatttatgaattctacctataaaaccaaaccgtttgaaatgcatgattatgttaaaacatctgtaattgcagGCATTATCAGTGGGAAGCGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTCTTATATTCTAATCCAAAGACAAGAG

upper sequence: AT3G44330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv06s0080g00880.t01 (Vitis vinifera), 3'ss of exon 5
------------gtatgtaatatgagtagtggatcttcttaccgtaata-tcaagtacatacctgacaaacttgtatatgtagGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTGGCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAG
             | | ||| ||   ||    |     | | | |  ||  ||  || ||  |||| ||| |    | | |||||||| ||||| |||||||| |||||||||||||| |||||||| ||||||||  | ||||| ||||| ||  | || || |||||||| ||||| ||||
gtatgtattttcctttttaacattcctatctaaataaataaactttttagccatataaatgtctgagaaaatatattttttagGCATTGTCAGTGGGAAGTGATAGCAATGGAAGTGGAGTTGTGGCACTTCTTGAGATAGCTAGGTTATTCTCTCTACTTTATTCAAATCCTAAGACAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtggatcttcttaccgtaatatcaagtacatacctgacaaacttgtatatgtagGCATTATCAGTTGGAAGTGACAGCAATGGAAGTGGGGTTGTGGCGCTTCTTGAAGTGGCTAGATTATTTTCCGTTCTGTACTCAAATCCCAAGACGAGAG
                 taatatcaa  TA-rich tract