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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactataataaactgatttatcgatacatatacgggtatgttaattatggaatcaaatttaagtgagatttatttgaaatgatgacagGGTCTGGATGACTTGATAAGCTTATTTCGCCGGCCTCCTTCCCGGAAAGTGAAAATGGGATGATTTTCTTCCTTTTCCGGTAACTTTATATTCTTCTCAT

Basic information

species Arabidopsis thaliana
transcript AT3G44330.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164202468|gb|ES059420.1|ES059420
EST:     TCACAACTCGG                         GGTCTGGATGACTTGATTAAGCTTATTTCGCCGGCCTCCTTCCCGGAAAGT
genomic: TCACAACTCGGgtaactataa ... atgatgacagGGTCTGGATGACTTGA-TAAGCTTATTTCGCCGGCCTCCTTCCCGGAAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtatgttaattatggaatcaaatttaagtgagatttatttgaaatgatgacagGGTCTGGATGACTTGATAAGCTTATTTCGCCGGCCTCCTTCCCGGAAAGTGAAAATGGGATGATTTTCTTCCTTTTCCGGTAACTTTATATTCTTCTCAT
     tgttaat  putative branch site (score: 3)
       ttaattatggaatcaa  TA-rich tract