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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCAAGTGTAACGTTCGACTTGCTCTTGCTTCTGGTTCTAGGATCATACTTGATAGTGCTTTTCAGTTTCCTCGTCATCACAACTCGGgtaactataataaactgatttatcgatacatatacgggtatgttaattatggaatcaaatttaagtgagatttatttgaaatgatgacag

Basic information

species Arabidopsis thaliana
transcript AT3G44330.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G44330.1 (Arabidopsis thaliana), 5'ss of exon 13
lower sequence: Vv06s0080g00880.t01 (Vitis vinifera), 5'ss of exon 13
GTGGCAAGTGTAACGTTCGACTTGCTCTTGCTTCTGGTTCTAGGATCATACTTGATAGTGCTTTTCAGTTTCCTCGTCATCACAACTCGGgtaac-----------tataataaactgatttatcgatacatatacgggtatgttaattatggaatcaaatttaagtgagatttatttgaaatgatgacag----------------------------------------------------------------
|| || |||||||| || |||||  | ||||| || || || |||||||| ||||||||||| ||||| || || |||||||||||| |||||             |   | || ||    ||||  |   | | |    ||||   ||    ||| |   | | |||  | || |   || |  || |                                                                  
GTTGCTAGTGTAACATTTGACTTATTGTTGCTCCTAGTGCTGGGATCATATTTGATAGTGCTCTTCAGCTTTCTTGTCATCACAACTAGGgtattctctcttttctttccaaaacctagcatatcttttattttccctaaatgtctgtttcataatga---tcatgtgt-acttttacaaattagtgcccttgtagactgaatggaatggaaaaataaaagtaatctaaacattctaacaatgctattgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164202468|gb|ES059420.1|ES059420
EST:     TCACAACTCGG                         GGTCTGGATGACTTGATTAAGCTTATTTCGCCGGCCTCCTTCCCGGAAAGT
genomic: TCACAACTCGGgtaactataa ... atgatgacagGGTCTGGATGACTTGA-TAAGCTTATTTCGCCGGCCTCCTTCCCGGAAAGT