1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taaatttagcatttagattcaatagatacataaatcttgtgttgtcttgattattattcgtcagctgacatttcaaaaatgtttgattacaatgatgcagCATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTATTATTATTTCCTAAG
species | Arabidopsis thaliana |
transcript | AT3G25040.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTGGATCTACCGGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAA CATGGATCGCCGGGTTTGTTCAAACACTGCTCTAEST: gi|125145045|gb|EL180308.1|EL180308
genomic: AACTGGATCTACC-GTTACTTCACTGAGCCGCACTTTGTTCACTGGATAAgtatgttcct ... aatgatgcagCATGGATCGCCGGGTTTGTTCAAACACTGCTCTA
EST: CGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAA CATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTATTEST: gi|125198249|gb|EL213203.1|EL213203
genomic: CGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAAgtatgttcct ... aatgatgcagCATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTATT
EST: CAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAA CATGGATCGCCGGGTTTGTTCAAA
genomic: CAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTCACTGGATAAgtatgttcct ... aatgatgcagCATGGATCGCCGGGTTTGTTCAAA
cttgattattattcgtcagctgacatttcaaaaatgtttgattacaatgatgcagCATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTATTATTATTTCCTAAG
atttcaaaaatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatttagcatttagattcaatagatacataaatcttgtgttgtcttgattattattcgtcagctgacatttcaaaaatgtttgattacaatgatgcagCATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTATTATTATTTCCTAAG
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