1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtcttctcaaaaagattgcaatttgttttccatggagcctgaactcttttgtttgacaagctgatttatttttgtgcaattggtgtatgctttatgatgtcagGTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAAT
species | Arabidopsis thaliana |
transcript | AT3G25040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAG GTATTGTGGACGTEST: gi|164042756|gb|ES004986.1|ES004986
genomic: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGgtttgtcttc ... atgatgtcagGTATTGTGGACGT
EST: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAG GTATTGTGGACGTTTTCATTGTACEST: gi|164207199|gb|EL978955.1|EL978955
genomic: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGgtttgtcttc ... atgatgtcagGTATTGTGGACGTCTTCATTGTAC
EST: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAA-GTTTACCTTTCTTGAG GTATTGTGGACGT
genomic: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGgtttgtcttc ... atgatgtcagGTATTGTGGACGT
ttgtttgacaagctgatttatttttgtgcaattggtgtatgctttatgatgtcagGTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAAT
agctgat putative branch site (score: 4)
tgatttatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtcttctcaaaaagattgcaatttgttttccatggagcctgaactcttttgtttgacaagctgatttatttttgtgcaattggtgtatgctttatgatgtcagGTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG