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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGgtacgatcttctttccataacttccctttacttgaaatttatcgttgcgtcgttctcttgactggatacatcattgactgttctcttgccaaactctataatttagtttccctctgagtttcatacttcgattgctataccaataatgctctcttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G25040.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G35390.1 (Glycine max), 5'ss of exon 3
CATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGgtacgatctt---ctttccataacttc--cctttacttgaaatttatc---gttgcgtcgtt-ctcttg-actggatacatcattgactgttctcttgccaaactctataatttagtttccctctgagtttcatacttcgattgctataccaataatgctctcttcttgcag
   |||| ||||| |||||||| ||| | ||||| || ||  | || || || ||||||||||||||||| ||||| ||||||||| | ||||| |||||||| ||| ||   ||||    || ||    | ||| |  |||||  ||    |   ||  || |  |||  ||||| |||  |||  | ||| | ||   |                                                                       
-CCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAATATGTCTTTCTTCTTGGGtaagatattgtcctttatccaattttaaacattattataaattcgtctggttcatgttattgcatttgtgctggaaacagaattagcagttatgttataa-----------------------------------------------------------------------

upper sequence: AT3G25040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 3
CATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGgtacgatcttctttccataacttccctttacttgaaatttatcgttgcgtcgttctcttgactggatacatcattgactgttctcttgccaaactctataatttagtttccctctgagtttcatacttcgattgctataccaataatgctctcttcttgcag
|  |||| ||||| |||||||| ||| | ||||| || ||  | || || || ||||||||||||||||| ||||| ||||| ||| | |||||||| ||||| ||| || |            ||||||  | |  || ||| ||         || ||  |  || |  |    | ||| || ||  |  | | || |  ||| | |   |                                                 
CCCTGTATTTGGAAGCTGTTGCTATACTTCCTCAACTAGTACTTTTACAGAGAACTAGAAATATTGACAATTTGACTGGACAGTATGTCTTTCTCCTCGGgtaagatattgt------------cctttatctaattttaatcattattataaattcctgggttcatgctactacaattgtcct-ttatctgattttaaacattattataaat-------------------------------------------------

upper sequence: AT3G25040.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 3
CATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGgtacgatcttctttccataacttccctttacttgaaatttatcgttgcgtcgtt-ctcttgactggatacatcattgactgttctcttgccaaactctataatttagtttccctctgagtttcatacttcgattgctataccaataatgctctcttcttgcag
| || |||||||| |||||||||||| | ||||| || || || |||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||     |  ||| || |||||   ||   |  |       |   | || ||| ||| |||   | | ||| | |     |  | ||  ||     ||| ||                                                            
CCTTATACTTGGAAGCTGTTGCCATACTTCCTCAACTGGTTTTATTGCAAAGGACTAGAAATATTGACAACTTGACAGGACAATATGTTTTTCTCCTCGGgtaatcaatcgttttca-aacttttgttctgtcaattcccggccaagtgttgttgctcatga--agttgcattaatacacatgatttt--catttgttatcatga----------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164162086|gb|ES078190.1|ES078190
EST:     TATTGACAACTTGACCGGACAATATATATTTCTCCTTGG                         GGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA
genomic: TATTGACAACTTGACCGGACAATATATATTTCTCCTTGGgtacgatctt ... cttcttgcagGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA
EST: gi|124916597|gb|EH990471.1|EH990471
EST:     GGACTAGAAATATTGACAACTTGACCGGACTAATATATATTTCTCCTTGG                         GGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA
genomic: GGACTAGAAATATTGACAACTTGACCGGAC-AATATATATTTCTCCTTGGgtacgatctt ... cttcttgcagGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA
EST: gi|124767931|gb|EH858061.1|EH858061
EST:     AGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTT-G                         GGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA
genomic: AGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGgtacgatctt ... cttcttgcagGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA
EST: gi|125198249|gb|EL213203.1|EL213203
EST:     ATATTTCTCCTT-G                         GGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA
genomic: ATATTTCTCCTTGGgtacgatctt ... cttcttgcagGGGGTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGA