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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTACGACAGAGAGCAAGATACGTTTCGTCATTGGTTCCTTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGgtttgtcttctcaaaaagattgcaatttgttttccatggagcctgaactcttttgtttgacaagctgatttatttttgtgcaattggtgtatgctttatgatgtcag

Basic information

species Arabidopsis thaliana
transcript AT3G25040.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164157579|gb|ES064311.1|ES064311
EST:     CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAG                         GTATTGTGGACGT
genomic: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGgtttgtcttc ... atgatgtcagGTATTGTGGACGT
EST: gi|164042756|gb|ES004986.1|ES004986
EST:     CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAG                         GTATTGTGGACGTTTTCATTGTAC
genomic: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGgtttgtcttc ... atgatgtcagGTATTGTGGACGTCTTCATTGTAC
EST: gi|164207199|gb|EL978955.1|EL978955
EST:     CTTGCTTTCTCTTAGCTCTTTTGATACATGAAA-GTTTACCTTTCTTGAG                         GTATTGTGGACGT
genomic: CTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGgtttgtcttc ... atgatgtcagGTATTGTGGACGT