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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactaactaactacttctagctcctttgtgttattgataacaaagctggtcaatttgcacaaatgtgtttgtttagatgtctctctgattctttcgtatggttggttgcagGCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGACATCAATGAACTTGTTCCTGAGATTCAATCTTAAATAGTTTGTTCACTAG

Basic information

species Arabidopsis thaliana
transcript AT3G09210.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124841234|gb|EH925673.1|EH925673
EST:     AATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAG                         GCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGA
genomic: AATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAGgtacactaac ... ttggttgcagGCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGA
EST: gi|86074852|gb|DR370609.1|DR370609
EST:     TTGCTGAATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAG                         GCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGAC
genomic: TTGCTGAATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAGgtacactaac ... ttggttgcagGCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGAC
EST: gi|124734224|gb|EH825626.1|EH825626
EST:     GAATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAG                         GCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGAC
genomic: GAATTTGTTGGGAACCTAAAGAAACTAAACCGCAAAACTGCAAAGgtacactaac ... ttggttgcagGCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacaaatgtgtttgtttagatgtctctctgattctttcgtatggttggttgcagGCAACGGTGGGATTTACTTTGTTTGGGAAGGAGACACTAGTGGAAATTGACATCAATGAACTTGTTCCTGAGATTCAATCTTAAATAGTTTGTTCACTAG
                          ctctgat  putative branch site (score: 4)
           tttgttta  TA-rich tract