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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGGTGGGCGGTTAGGGTTTCGAGACTTCGTGGTCATGAGACTGCTCAAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaattttactggatatttgggttgtgttgggtgattttaaagtttggattttgacaatgagattggatcaaactggtatcttgatagaattgc...

Basic information

species Arabidopsis thaliana
transcript AT3G09210.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124964498|gb|EL038755.1|EL038755
EST:     TCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACG                         GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATA
genomic: TCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATA
EST: gi|124779886|gb|EH869829.1|EH869829
EST:     AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACG                         GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATA
genomic: AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATA
EST: gi|47829971|gb|CK119655.1|CK119655
EST:     AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACG                         GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGT
genomic: AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGT
EST: gi|124707360|gb|EH798762.1|EH798762
EST:     CTCGTCAATTCCCTGAAATGGAATTCACG                         GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGACTAAAGAACGGTTCTAT
genomic: CTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAG-CTAAAGAACGGTTCTAT