1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtgaaaagatttgattttgggttattgtgtgatctttagaatttgtggggaattcatacattggtattgaaacaagtggcttttgaatttggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCAGTGTTCCCTGGTTGCATTTTCATCAGATGTA
species | Arabidopsis thaliana |
transcript | AT3G09210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACG GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATAEST: gi|124779886|gb|EH869829.1|EH869829
genomic: TCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATA
EST: AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACG GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATAEST: gi|47829971|gb|CK119655.1|CK119655
genomic: AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATA
EST: AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACG GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTEST: gi|124707360|gb|EH798762.1|EH798762
genomic: AAATCTTAGCTCGAGCTCTGGCTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGT
EST: CTCGTCAATTCCCTGAAATGGAATTCACG GTTTATGCACCATCTGTTCAAGTGAAGAGAAAGACTAAAGAACGGTTCTAT
genomic: CTCGTCAATTCCCTGAAATGGAATTCACGgtaattggaa ... ggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAG-CTAAAGAACGGTTCTAT
tggggaattcatacattggtattgaaacaagtggcttttgaatttggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCAGTGTTCCCTGGTTGCATTTTCATCAGATGTA
ttttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaaagatttgattttgggttattgtgtgatctttagaatttgtggggaattcatacattggtattgaaacaagtggcttttgaatttggttgtccagGTTTATGCACCATCTGTTCAAGTGAAGAGAAAGCTAAAGAACGGTTCTATATCTGTTAAACCGAAACCAGTGTTCCCTGGTTGCATTTTCATCAGATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- gaaaaga
- - - - - - gattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacaa