1 5' 3' | 2 5' 3' | 3 5' 3' |
GTTGCATTTTCATCAGATGTATATTGAACAAAGAGATACATGACTCCATAAGAGACGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACgtgagtagtattctcactctcactctcaccctatgtgtgttaaggtctgtgaattaatttgtatctgcattttttttttgtag
species | Arabidopsis thaliana |
transcript | AT3G09210.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATAC CAAGAGACAGATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAGCEST: gi|125006465|gb|EL078734.1|EL078734
genomic: ATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACgtgagtagta ... ttttttgtagCAAGAGACAGATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAGC
EST: AGAGACGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATAC CAAGAGACAGATTAATAAACCAAGACCAGTAGEST: gi|124953088|gb|EL028307.1|EL028307
genomic: AGAGACGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACgtgagtagta ... ttttttgtagCAAGAGACAGATTAATAAACCAAGACCAGTAG
EST: GAGGTTTCATAGGTTCAAAAGTTGGAAATAC CAAGAGACAGATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAGCEST: gi|125238415|gb|EL252500.1|EL252500
genomic: GAGGTTTCATAGGTTCAAAAGTTGGAAATACgtgagtagta ... ttttttgtagCAAGAGACAGATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAGC
EST: GATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGTAAATAC CAAGAGACAGATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAG
genomic: GATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGG-AAATACgtgagtagta ... ttttttgtagCAAGAGACAGATTAATAAACCAAGACCAGTAGATGACAGTGACTTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCATTTTCATCAGATGTATATTGAACAAAGAGATACATGACTCCATAAGAGACGTTGATGGAGTCGGAGGTTTCATAGGTTCAAAAGTTGGAAATACgtgagtagtattctcactctcactctcaccctatgtgtgttaaggtctgtgaattaatttgtatctgcattttttttttgtag
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