1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttcgagtttgtgtatctctactcctaccattttaacacaaattatgttactatcttagccaattttgtgtgttaacgcgagcgatattgatgctgtggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCACATGTACAAGACAGATAGATCCAAGTACG
species | Arabidopsis thaliana |
transcript | AT3G08690.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCCAAG GGTTCTGTTGTCGATTTGCTCGCTGTTGACTGEST: gi|125299573|gb|EL313658.1|EL313658
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagG-TTCTGTTGTCGATTTGCTCGCTGTTGACTG
EST: CTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATTCTEST: gi|116447434|gb|EG490026.1|EG490026
genomic: CTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|86029016|gb|DR324769.1|DR324769
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCCAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|164216648|gb|ES088214.1|ES088214
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACEST: gi|86029017|gb|DR324770.1|DR324770
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGAC
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCCAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|124783418|gb|EH873262.1|EH873262
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGEST: gi|116447417|gb|EG490009.1|EG490009
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTG
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|86029011|gb|DR324764.1|DR324764
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCCAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|86077618|gb|DR373375.1|DR373375
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCCAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|19875312|gb|AU236143.1|AU236143
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|19741608|gb|AU226961.1|AU226961
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|86029014|gb|DR324767.1|DR324767
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTEST: gi|124838580|gb|EH923019.1|EH923019
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCT
EST: GCCTTGATATTTTGAA-GAGCAATGGAGCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCEST: gi|301502421|gb|HO207961.1|HO207961
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTC
EST: GCCTTGATATTTTGAAAGAGCAATGGACCCCTGCTCTTACTATCTCTAAG GTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCC
genomic: GCCTTGATATTTTGAAAGAGCAATGGAGCCCTGCTCTTACTATCTCTAAGgttcgagttt ... tggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCC
tatcttagccaattttgtgtgttaacgcgagcgatattgatgctgtggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCACATGTACAAGACAGATAGATCCAAGTACG
aattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgagtttgtgtatctctactcctaccattttaacacaaattatgttactatcttagccaattttgtgtgttaacgcgagcgatattgatgctgtggaaattagGTTCTGTTGTCGATTTGCTCGCTGTTGACTGACCCAAACCCAGATGATCCTCTTGTGCCGGAGATAGCTCACATGTACAAGACAGATAGATCCAAGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA