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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCGGAGGAGTGTTTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgttgtgttatgagactctttatgattcatcggtttttatcattgatcttatgatgtgaatccatcgatcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G08690.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86029019|gb|DR324772.1|DR324772
EST:     TTTTGGTTTCTATTCATTTTCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|86029013|gb|DR324766.1|DR324766
EST:     TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|116447434|gb|EG490026.1|EG490026
EST:     GGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: GGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|86029016|gb|DR324769.1|DR324769
EST:     TTTTGGTTTCTATTCATTTTCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|86029017|gb|DR324770.1|DR324770
EST:     TTTTGGTTTCTATTCATTTTCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|116447417|gb|EG490009.1|EG490009
EST:     TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|86029011|gb|DR324764.1|DR324764
EST:     TTTTGGTTTCTATTCATTTTCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|86077618|gb|DR373375.1|DR373375
EST:     TTTTGGTTTCTATTCATTTTCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|19875312|gb|AU236143.1|AU236143
EST:     TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|86029015|gb|DR324768.1|DR324768
EST:     TTTTGGTTTCTATTCATTTTCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|19741608|gb|AU226961.1|AU226961
EST:     ATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: ATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|86029014|gb|DR324767.1|DR324767
EST:     TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
EST: gi|301502421|gb|HO207961.1|HO207961
EST:     TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAG                         GTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT
genomic: TTTTGGTTTCTATTCATTTCCCTCCGGATTATCCTTTCAAGCCACCAAAGgtaatgtgtt ... gatcttgcagGTGTCTTTTAAGACTAAGGTGTACCATCCAAACATCAATAGCAATGGAAGT