1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagaactctgcatggttttgagtttatgtcaaagtgtctccttttgtagctcctgctaatatgtctttattgatgtaattttgttgtcacgttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCGGAGGAGTGTTTTTGGTTTCTATTCATTTCCC
species | Arabidopsis thaliana |
transcript | AT3G08690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|86029013|gb|DR324766.1|DR324766
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|86029016|gb|DR324769.1|DR324769
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|86029017|gb|DR324770.1|DR324770
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|116447417|gb|EG490009.1|EG490009
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCEST: gi|86029011|gb|DR324764.1|DR324764
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|86077618|gb|DR373375.1|DR373375
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|19875312|gb|AU236143.1|AU236143
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCEST: gi|86029015|gb|DR324768.1|DR324768
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|86029014|gb|DR324767.1|DR324767
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCAACTATCATGGGACCTCEST: gi|301502421|gb|HO207961.1|HO207961
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
EST: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTG GTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
genomic: GAAGGAGCTCAAGGATCTGCAGAAGGATCCTCCTTCAAACTGCAGCGCTGgtaatctccc ... gttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTC
gtagctcctgctaatatgtctttattgatgtaattttgttgtcacgttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCGGAGGAGTGTTTTTGGTTTCTATTCATTTCCC
ttgtttt CT-rich tract
tttattgatgtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaactctgcatggttttgagtttatgtcaaagtgtctccttttgtagctcctgctaatatgtctttattgatgtaattttgttgtcacgttgttttagGTCCGGTGGCTGAGGACATGTTCCATTGGCAAGCCACTATCATGGGACCTCCTGAAAGTCCGTATGCCGGAGGAGTGTTTTTGGTTTCTATTCATTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
cagaact
- - - - - - -ggttttg
- - - - - - - - - - - - - - tcaaagt