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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACAAGTTTCGTTTTCTCCTTTGCACTCCATTTTTATTCTCGATTCTCTTCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattccaccatttctctttggttaaaccctaatttctttctctcccgaatcgtcctctgtttttgttttgcgcgattagtttccaccgcttaataa...

Basic information

species Arabidopsis thaliana
transcript AT3G08690.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86029019|gb|DR324772.1|DR324772
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|86029013|gb|DR324766.1|DR324766
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|124818264|gb|EH903130.1|EH903130
EST:     CGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: CGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|86029016|gb|DR324769.1|DR324769
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCTTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|86029017|gb|DR324770.1|DR324770
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|116447417|gb|EG490009.1|EG490009
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|86029011|gb|DR324764.1|DR324764
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|86077618|gb|DR373375.1|DR373375
EST:     TCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCTTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|19875312|gb|AU236143.1|AU236143
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|86029015|gb|DR324768.1|DR324768
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|86029014|gb|DR324767.1|DR324767
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
EST: gi|301502421|gb|HO207961.1|HO207961
EST:     TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAG                         GTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA
genomic: TCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattcc ... gtttccacagGTTTTCTCGTCTCTGACGCATGGCTTCTAAGAGGATCTTGAAGGAGCTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAACAAGTTTCGTTTTCTCCTTTGCACTCCATTTTTATTCTCGATTCTCTTCTCTCCCGATAAAGAAGCTCTCGCTTTGTGTTGTCCGTCCTTCTTCCAGgtctaattccaccatttctctttggttaaaccctaatttctttctctcccgaatcgtcctctgtttttgttttgcgcgattagtttccaccgcttaataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttccacc