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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATAAGAAACTGCTATTCCTCTCTTTGTACTTCCTGATTTGGGGAGAAGCTGCCAACATACGGTTTCTTCCAGAATGTTTGTGCTACATATTCCACCATgtaagtttatgctgactgtttatttttctccatattctaacaggtgttaagatgaatgaaatctcctaagtacttaccgctctgacttgctactggttcattttcatcataatatgccgtttgtttggtcttttgcgctgatactgattattttgtacag

Basic information

species Arabidopsis thaliana
transcript AT3G07160.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G44150.2 (Glycine max), 5'ss of exon 9
AGATAAGAAACTGCTATTCCTCTCTTTGTACTTCCTGATTTGGGGAGAAGCTGCCAACATACGGTTTCTTCCAGAATGTTTGTGCTACATATTCCACCATgtaagtttat--gctgactgtttatttttctccatattctaacaggtgttaagatgaatgaaatctcctaagtacttaccgctctgacttgctactggttcattttcatcataatatgccgtttgtttggtcttttgcgctgatactgattattttgtacag
||| |||||| | ||||   | |||||||||||||| || ||||| |||||  | || ||  ||||||| |||||||| ||||||||||||||||| |||||||||| ||  |   | | |   |     | | |||| |     || ||  | |   | | || |     | | |||  | | |   ||||      ||                                                              
AGAGAAGAAATTACTATATGTTTCTTTGTACTTCCTAATATGGGGTGAAGCCTCAAATATCAGGTTTCTCCCAGAATGCTTGTGCTACATATTCCATCATgtaagttaattggacaagtctgagtcacagttcttattattttttgttttttgttttttaagattttgcttg-atttattgatattggttgcagtaacttt-------------------------------------------------------------

upper sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 9
AGATAAGAAACTGCTATTCCTCTCTTTGTACTTCCTGATTTGGGGAGAAGCTGCCAACATACGGTTTCTTCCAGAATGTTTGTGCTACATATTCCACCATgtaagtttatgctgactgtttatttttctccatattctaacaggtgttaagatgaatgaaatctcctaagtacttaccgctctgacttgctactggttcattttcatcataatatgccgtttgtttggtcttttgcgctgatactgattattttgtacag
||| |||||| | ||||   | |||||||||||||| || ||||| |||||  | || ||  | ||||| |||||||| ||||||||||||| ||| |||||||||| ||  |||     | |   || |  |  |       || ||  | |   | | || |     | | |||  | | |   ||||      ||                                                              
AGAGAAGAAATTACTATATGTTTCTTTGTACTTCCTAATATGGGGTGAAGCCTCAAATATCAGATTTCTACCAGAATGCTTGTGCTACATATACCATCATgtaagttaat--tgaacaagtctgagtcacagttcttatttttgttttttgttatttaagattttgcttg-atttattgatattggttgcagtaactttgcca---------------------------------------------------------

upper sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: PP1S67_234V6.1 (Physcomitrella patens), 5'ss of exon 9
AGATAAGAAACTGCTATTCCTCTCTTTGTACTTCCTGATTTGGGGAGAAGCTGCCAACATACGGTTTCTTCCAGAATGTTTGTGCTACATATTCCACCATgtaagtt-tatgctgactgtttatttttctccatattctaacaggtgttaagatgaatgaaatctcctaagtacttaccgctctgacttgctactggttcattttcatcataatatgccgtttgtttggtcttttgcgctgatactgattattttgtacag
  |    |   |  |  |     || | || || || || |||||||||||||| ||| |||||||  | ||||| ||| |||| ||||| ||||| ||||||||     |  |  |||   || |   |  |  || ||    || || || |   |     ||  |   |  ||     | ||   |    | | |||| | |||||                                                    
GCAATTAAGGTTATTCCTGACTGCTCTTTATTTACTTATCTGGGGAGAAGCTGCTAACTTACGGTTCTTACCAGAGTGTCTGTGTTACATCTTCCATCATgtaagaagcgtcttacctgacaatgtggttttagttttta----gtttttagtttttt-----ctttttcttgtttctttttttgttctagcgcagtttcaatctcatc----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116421624|gb|EG464216.1|EG464216
EST:     CTGCCAACATACGGTTTCTTCCAGAATGTTTGTGCTACATATTCCACCAT                         ATGGTTAGAGAAATGGATGAGATCTTACGCCA
genomic: CTGCCAACATACGGTTTCTTCCAGAATGTTTGTGCTACATATTCCACCATgtaagtttat ... ttttgtacagATGGTTAGAGAAATGGATGAGATCTTACGCCA