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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGTGCCTATTCTACAACAAGACGTCTGGCTGTTTCTCGCATTTTTCTTCGTTTCATTTGGTTTGGCCTTGCTTCCGTCTTCATCTCTTTCCTCTATGTgtatgttaatattcttttcttgtaccttcttcagctttcattttgcatttgctattttccttaatcttggcatagcttttggcattactttgtttgatagtttttttgtgtgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G07160.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA20G38860.1 (Glycine max), 5'ss of exon 15
ACGGTGCCTATTCTACAACAAGACGTCTGGCTGTTTCTCGCATTTTTCTTCGTTTCATTTGGTTTGGCCTTGCTTCCGTCTTCATCTCTTTCCTCTATGTgtatgttaatattcttttcttgtaccttc-ttcagctttcattttgcatttgctattttcctta---atcttggcatagctt-ttggcattactttgtttgatagtttttt-tgtgtgtgcag--------
| ||||| ||||| |||||||||||  | ||||| ||||| |||||| | |||||  |||||||| |||||||||| || |||||  ||||||| |||||||||||     |||  || |  ||  ||  |||   | |  |     |||     ||||   ||    | |||   |   || || |  | |  |  ||| | | ||     ||| ||||||         
ATGGTGCATATTCAACAACAAGACGCTTAGCTGTCTCTCGAATTTTTTTACGTTTTCTTTGGTTTAGCCTTGCTTCAGTTTTCATAACTTTCCTTTATGTgtatgtatgccttcagttataataattttgttcttatgttctcacatattcatccttttatctatttgttttgattttttttattcgtgtgaagtgattttacatttccagatgtttgtgcatgactgcag

upper sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA10G44150.2 (Glycine max), 5'ss of exon 15
ACGGTGCCTATTCTACAACAAGACGTCTGGCTGTTTCTCGCATTTTTCTTCGTTTCATTTGGTTTGGCCTTGCTTCCGTCTTCATCTCTTTCCTCTATGTgtatgttaatattcttttcttgtaccttcttcagctttcattttgcatttgctattttccttaatcttggcatagcttttggcattactttgtttgatagtttttttgtgtgtgcag
| ||||| ||||| |||||||||||    ||||| ||||| |||||| | |||||  |||||||  |||||||||| || |||||  ||||||| |||||||||||     |||| || |  ||               ||||||   ||  ||| |||  | ||| |  |||  |||||  |  || ||  ||||||  |||| || |||||| ||
ATGGTGCATATTCAACAACAAGACGCTCAGCTGTCTCTCGAATTTTTTTACGTTTTCTTTGGTTCAGCCTTGCTTCAGTTTTCATAACTTTCCTTTATGTgtatgtatgccttctgttataata---------------attttg---ttcttatgttctctcatcct--catc-cttttatc--tatttgttttgatttttttatt-tgtgtgaag

upper sequence: AT3G07160.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv06s0004g01200.t01 (Vitis vinifera), 5'ss of exon 16
ACGGTGCCTATTCTACAACAAGACGTCTGGCTGTTTCTCGCATTTTTCTTCGTTTCATTTGGTTTGGCCTTGCTTCCGTCTTCATCTCTTTCCTCTATGTgtatgt-taatattcttttcttgtaccttcttcagctttcattttgcatttgctattttccttaatcttggcatagcttttggcattactttgtttgatagtttttttgtgtgtgcag---------
| ||||| |||||||||||| || || | ||||| |||||  ||||||| |||||| | |||||| |  ||||||| |||||||| |  ||||| ||||||||||| |  |  |    | ||| |  |||| | |  |  ||| |    || ||   | | ||  | |     |  | ||  | | |  ||| |||| |  |||   ||||  |||           
ATGGTGCATATTCTACAACACGAAGTGTAGCTGTATCTCGAGTTTTTCTCCGTTTCCTCTGGTTTAGTGTTGCTTCAGTCTTCATATGCTTCCTTTATGTgtatgtctcctgataccctgttgaattttctcctg--taaattatattctttcttgatgcttttgttt----gtcaccttctgtact-ttttatttgctgatttggctgtgcatgctctaatctcag