1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcccgttatttcgtgataccacaggtttaccaattagaccttttatcaactatcatatttttttgtttgttaaaacacatcttatggcttgtttgtgcagTTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGCAACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAA
species | Arabidopsis thaliana |
transcript | AT3G05545.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAG TTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCEST: gi|124726998|gb|EH818400.1|EH818400
genomic: ATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGgtaaacattt ... gtttgtgcagTTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACC
EST: GACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAG TTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCEST: gi|125273339|gb|EL287424.1|EL287424
genomic: GACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGgtaaacattt ... gtttgtgcagTTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACC
EST: ATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAG TTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGG
genomic: ATGATCAGACCCAGACCGCCACATTTCACGCGTCCATTTCATGGTCACAGgtaaacattt ... gtttgtgcagTTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGG
tcaactatcatatttttttgtttgttaaaacacatcttatggcttgtttgtgcagTTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGCAACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAA
cttgttt CT-rich tract
tatcatatttttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccgttatttcgtgataccacaggtttaccaattagaccttttatcaactatcatatttttttgtttgttaaaacacatcttatggcttgtttgtgcagTTCCAGTGGTAGAGCGGGTAGCTCGGTGGCATCTGTTCCGAGGACACCACCATTTCCAGGAAGCAACGCTCGGACCCGAGACAGAATGCAGGCTCTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - taccaca
- - - - - - - - - - - - - ttaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaca