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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactatttgtcagatcggttattccatttttgtcctcattatcttcttcttatgttctggaattcgggtttatcgatctattaattctaatgttgtggtacagATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACCGCAGGTCATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCACTC

Basic information

species Arabidopsis thaliana
transcript AT3G05545.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447321|gb|EG489913.1|EG489913
EST:     GGATGGAGAATTTTCACCGAGTTCAT                         ATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
genomic: GGATGGAGAATTTTCACCGAGTTCATgtaagactat ... tgtggtacagATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
EST: gi|116463813|gb|EG506405.1|EG506405
EST:     GGATGGAGAATTTTCACCGAGTTCAT                         ATCACGATCTTTTGGGGCAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
genomic: GGATGGAGAATTTTCACCGAGTTCATgtaagactat ... tgtggtacagATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
EST: gi|116485580|gb|EG528172.1|EG528172
EST:     GGATGGAGAATTTTCACCGAGTTCAT                         ATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
genomic: GGATGGAGAATTTTCACCGAGTTCATgtaagactat ... tgtggtacagATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
EST: gi|116463809|gb|EG506401.1|EG506401
EST:     GGATGGAGAATTTTCACCGAGTTCAT                         ATCACGATCTTTTGGGGCAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
genomic: GGATGGAGAATTTTCACCGAGTTCATgtaagactat ... tgtggtacagATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
EST: gi|116421007|gb|EG463599.1|EG463599
EST:     GGATGGAGAATTTTCACCGAGTTCAT                         ATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA
genomic: GGATGGAGAATTTTCACCGAGTTCATgtaagactat ... tgtggtacagATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgttctggaattcgggtttatcgatctattaattctaatgttgtggtacagATCACGATCTTTTGGGACAGCAAGGTTACTATACTGAACCAGCAGCGCCAACCGCAGGTCATCCATGTCCATATGTAACCTATTTTGGCCCGGTTCACTC
                                    ttctaat  putative branch site (score: 2)
                           atctattaattctaat  TA-rich tract