1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagaaactgataacacaatccttcttatattccattgcgcttctgcattacttttcacttctttgtctcatgtgctgagtttttaatttttgaaagattgctgttcattttatttgattgcttcaattatgttccatctcgaaaataccttgtgtttatgtatatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA
species | Arabidopsis thaliana |
transcript | AT3G05545.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATG TCTTTTGGAGTTCACTGGTGCCCATTTEST: gi|116447321|gb|EG489913.1|EG489913
genomic: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGgtaagaaact ... atatttgtagTCTTTTGGAGTTCACTGGTGCCCATTT
EST: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATG TCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTEST: gi|116463813|gb|EG506405.1|EG506405
genomic: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGgtaagaaact ... atatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCT
EST: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATG TCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTEST: gi|301502796|gb|HO208336.1|HO208336
genomic: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGgtaagaaact ... atatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCT
EST: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATG TCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTEST: gi|116485580|gb|EG528172.1|EG528172
genomic: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGgtaagaaact ... atatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCT
EST: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATG TCTTTTGGAGTTCGCTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTEST: gi|116463809|gb|EG506401.1|EG506401
genomic: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGgtaagaaact ... atatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCT
EST: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATG TCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTEST: gi|116421007|gb|EG463599.1|EG463599
genomic: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGgtaagaaact ... atatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCT
EST: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATG TCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCT
genomic: ATTGGGTTCACGAAGAAGATATTTATGATATTGGAGCATACTCTGAAATGgtaagaaact ... atatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCT
attgcttcaattatgttccatctcgaaaataccttgtgtttatgtatatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA
atttgat putative branch site (score: 5)
tttatgtatatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaactgataacacaatccttcttatattccattgcgcttctgcattacttttcacttctttgtctcatgtgctgagtttttaatttttgaaagattgctgttcattttatttgattgcttcaattatgttccatctcgaaaataccttgtgtttatgtatatttgtagTCTTTTGGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA