1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcaactgcataacatccatttaactctcttttctgctacttttggcaatcaaaactggcattctcttcccttctttgctgatgaatctctttcaaactttgtagGGATGGAGAATTTTCACCGAGTTCAT
species | Arabidopsis thaliana |
transcript | AT3G05545.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA GGATGGAGAATTTTCACCGAGTTCATEST: gi|116463813|gb|EG506405.1|EG506405
genomic: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAgtaagcaact ... aactttgtagGGATGGAGAATTTTCACCGAGTTCAT
EST: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA GGATGGAGAATTTTCACCGAGTTCATEST: gi|116485580|gb|EG528172.1|EG528172
genomic: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAgtaagcaact ... aactttgtagGGATGGAGAATTTTCACCGAGTTCAT
EST: GGAGTTCGCTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA GGATGGAGAATTTTCACCGAGTTCATEST: gi|116463809|gb|EG506401.1|EG506401
genomic: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAgtaagcaact ... aactttgtagGGATGGAGAATTTTCACCGAGTTCAT
EST: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA GGATGGAGAATTTTCACCGAGTTCATEST: gi|116421007|gb|EG463599.1|EG463599
genomic: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAgtaagcaact ... aactttgtagGGATGGAGAATTTTCACCGAGTTCAT
EST: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGA GGATGGAGAATTTTCACCGAGTTCAT
genomic: GGAGTTCACTGGTGCCCATTTGGAAGCTCAGCCCGTCTTCCTTCTTTCGAgtaagcaact ... aactttgtagGGATGGAGAATTTTCACCGAGTTCAT
caaaactggcattctcttcccttctttgctgatgaatctctttcaaactttgtagGGATGGAGAATTTTCACCGAGTTCAT
tgctgat putative branch site (score: 3)
tttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaactgcataacatccatttaactctcttttctgctacttttggcaatcaaaactggcattctcttcccttctttgctgatgaatctctttcaaactttgtagGGATGGAGAATTTTCACCGAGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA