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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCCATGACTGCTTATGGTTACGAAATCCTTCAAACCCTAATTATCGACATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGgtaagtcctcaaaatcgtaaaaccctaaatcaaaatctaaacaaataaatggtcaaaaccctgaattcaattgttgttacag

Basic information

species Arabidopsis thaliana
transcript AT3G01290.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437518|gb|EG480110.1|EG480110
EST:     CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
genomic: CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
EST: gi|125232934|gb|EL247019.1|EL247019
EST:     CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCAGCGAGC
genomic: CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGC
EST: gi|86083495|gb|DR379254.1|DR379254
EST:     CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCWGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
genomic: CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
EST: gi|116437519|gb|EG480111.1|EG480111
EST:     CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
genomic: CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
EST: gi|124819415|gb|EH904281.1|EH904281
EST:     GTGCCATGAACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
genomic: GTGCCATGAACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
EST: gi|301501545|gb|HO207085.1|HO207085
EST:     CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAAGAGGCTGAAAAAATC
genomic: CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCA-GAGGCTGAGAAAATC
EST: gi|125034696|gb|EL106965.1|EL106965
EST:     AACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
genomic: AACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGGCTGAGAAAATCA
EST: gi|124790142|gb|EH879821.1|EH879821
EST:     CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCG                         CGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGG
genomic: CATTGAGCCTGATCAACAGGTTAAACGTGCCATGAACGAAATCAACGCCGgtaagtcctc ... gttgttacagCGGCGAGGATGAGAGTGGCAGCGAGCGAAAAAGCAGAGG