Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaacattgaacacacataatgcaaaacttcttcttctaatggaccattaattcatctatgattatgtttcagGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCTGACAAGGCAAGTGATGCTTTTTACAGACTCAGCAATCCAACCACCCAAA

Basic information

species Arabidopsis thaliana
transcript AT3G01290.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437518|gb|EG480110.1|EG480110
EST:     TGACCCTTCGTCTTCAGCAACTCGATGTTCAGTGTGAAACCAAAACAAAG                         GACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCT
genomic: TGACCCTTCGTCTTCAGCAACTCGATGTTCAGTGTGAAACCAAAACAAAGgtaagtaaca ... tatgtttcagGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCT
EST: gi|116437519|gb|EG480111.1|EG480111
EST:     TGACCCTTCGTCTTCAGCAACTCGATGTTCAGTGTGAAACCAAAACAAAG                         GACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCT
genomic: TGACCCTTCGTCTTCAGCAACTCGATGTTCAGTGTGAAACCAAAACAAAGgtaagtaaca ... tatgtttcagGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCT
EST: gi|301501545|gb|HO207085.1|HO207085
EST:     TGACCCTTCGTCTTCAGCAACTCGATGTTCAGTGTGAAACCAAAACAAAG                         GACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCT
genomic: TGACCCTTCGTCTTCAGCAACTCGATGTTCAGTGTGAAACCAAAACAAAGgtaagtaaca ... tatgtttcagGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcaaaacttcttcttctaatggaccattaattcatctatgattatgtttcagGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATACAGAGTCTTAGCTGACAAGGCAAGTGATGCTTTTTACAGACTCAGCAATCCAACCACCCAAA
                            attaattcatctat  TA-rich tract