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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCATCCATACAATACAGAGTCTTAGCTGACAAGGCAAGTGATGCTTTTTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatatctcctcttcatttctcaatacttagggaaagtgatgatttatccggtcaagttattgattttcgttttgttttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G01290.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437518|gb|EG480110.1|EG480110
EST:     TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG                         TGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
EST: gi|116437519|gb|EG480111.1|EG480111
EST:     TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG                         TGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
EST: gi|301501545|gb|HO207085.1|HO207085
EST:     TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG                         TGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
EST: gi|124793534|gb|EH883213.1|EH883213
EST:     TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG                         TGATCAGAGCATGTG
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTG