1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatatatatctcctcttcatttctcaatacttagggaaagtgatgatttatccggtcaagttattgattttcgttttgttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGAAGAATGAAATTGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATGAC
species | Arabidopsis thaliana |
transcript | AT3G01290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG TGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGAEST: gi|116437519|gb|EG480111.1|EG480111
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
EST: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG TGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGAEST: gi|301501545|gb|HO207085.1|HO207085
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
EST: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG TGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGAEST: gi|124793534|gb|EH883213.1|EH883213
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGA
EST: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATG TGATCAGAGCATGTG
genomic: TTACAGACTCAGCAATCCAACCACCCAAATCAAAGCCTACGTCTTTGATGgtatatatat ... gttttttcagTGATCAGAGCATGTG
agggaaagtgatgatttatccggtcaagttattgattttcgttttgttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGAAGAATGAAATTGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATGAC
tattgat putative branch site (score: 3)
ttttcgttttgttttt CT-rich tract
aagttattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatatatctcctcttcatttctcaatacttagggaaagtgatgatttatccggtcaagttattgattttcgttttgttttttcagTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGATGTGTTCGAGCAGAAGAATGAAATTGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT