Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGAAACAACAGTTTGCTGCTAGATTCCCGAAAATGCCCACTACGGCTATCGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAGgtaacaaacaacacaaagatccttaaaacattcatgtggttttttgcagtttgcttttggcttatcaattagacctgcatgtgttgtgtgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G46070.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080215|gb|DR375972.1|DR375972
EST:     CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAG                         TCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
genomic: CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAGgtaacaaaca ... gtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
EST: gi|125041654|gb|EL113923.1|EL113923
EST:     CTTTGATCCTAACCGGCGCATCTCAG                         TCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
genomic: CTTTGATCCTAACCGGCGCATCTCAGgtaacaaaca ... gtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
EST: gi|19797765|gb|AU229451.1|AU229451
EST:     CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAA                         TCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
genomic: CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAGgtaacaaaca ... gtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA