Sequence
atgc intronic sequence ATGC exonic sequencegtaagccttaagcatcatttctcacatttgacaacatcttttaagtttctcaaatttgctagatctatcaagtgttcctgatcttcagggtcaaatgctctttatatataatttcgtttactctaatcttcaagcctcggtttgattctttagGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCC
Basic information
species | Arabidopsis thaliana |
transcript | AT2G46070.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G46070.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 3'ss of exon 2
gtaagccttaagcatcatttctcacatttgacaacatcttttaagtttctcaaatttgctagatctatcaagtgttcctgatcttcagggtcaaatgctctttatatataatttcgtttactctaatcttcaagcctcggtttgattctttagGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCC
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--------------------------------------------gtcttttatcttggcaa----tactagggattgttag-----atgattagatagtaacaagaaacaattttttttgtgacttgtgacaaaatctagccatttttcacagGTCATCTCAATAAAGGACATCATACGGCCACCAAGGAGGGAGAACTTCAATGATGTCTACATTGTCTATGAGCTCATGGACACTGATCTTCACCACCTTC
upper sequence: AT2G46070.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA18G47140.1 (Glycine max), 3'ss of exon 2
gtaagccttaagcatcatttctcacatttgacaacatcttttaagtttctca--aatttgctagatctatcaagtgttcctgatcttcagggtcaaatgctctttatatataatttcgtttactctaatcttcaagcctcggtttgattctttagGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCC-
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---------------------------------------------tttcatgggagcttcctgattggattttaattctacaatcattat--tagaattcaatttgaa-acaaggctgctcactta-----ccaattacttctctaatgc---aggTGATAGCCCTTAAAGACATTATACGACCACCACAGAGGGATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAAT
upper sequence: AT2G46070.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G39190.1 (Glycine max), 3'ss of exon 2
gtaagccttaagcatcatttctcacatttgacaacatcttttaagtttctcaaatttgctagatctatcaagtgtt--cctgatcttcagggtcaaatgctctttatatataatttcgtttactctaatcttcaagcctcggtttgattctttagGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCC
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--------------------------------------------gtttcatgggagtttt---tttattggattttaattttacattcattattagaattcaatttgaaacaaggctgctcactta-----ccaattacttctctaatgc---agGTGATAGCCCTTAAAGACATTATTCGACCACCACAAAGGTATAACTTCAATGACGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAA
upper sequence: AT2G46070.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv15s0046g02010.t01 (Vitis vinifera), 3'ss of exon 2
gtaagccttaagcatcatttctcacatttgacaacatcttttaagtttctcaaatttgctagatctatcaagtgttcctgatcttcagggtcaaatgctctttatatataatttcgtttactctaatcttcaagcctcggtttgattctttagGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCC
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---------------------------------------ctttagttactttggttcgtttgttggattcaggttctagaattttttatgt----tcctcctggtggaataatatatttactatcagttcttatcctccgc----------agGTTATTGTCTTGAAAGACATCATACGGCCACCTAAGAGGGAGAACTTCAATGATGTCTACATTGTTTATGAATTAATGGACACTGATCTGCATCAGATAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877463|gb|AU238294.1|AU238294EST: AGAGAACGCTACGTGAAATTAAACTTCTCAGGCATATGGATCATGAGAAC GTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAAT
genomic: AGAGAACGCTACGTGAAATTAAACTTCTCAGGCATATGGATCATGAGAACgtaagcctta ... gattctttagGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctttatatataatttcgtttactctaatcttcaagcctcggtttgattctttagGTTATAACCATCAAAGATATTGTAAGACCTCCGCAACGAGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCC
ttcttt CT-rich tract
atatataatttcgttt TA-rich tract