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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctctgtgttgttctaatcatttgtaaagtcatggaactctctgatttgatctttattctatttacttgtcttcctgttacag

Basic information

species Arabidopsis thaliana
transcript AT2G46070.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46070.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os08g06060.1 (Oryza sativa), 5'ss of exon 3
AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctctgtgttgttctaatcatttgtaaagtcat------ggaactctctgatttgatctttattctatttacttgt-------cttcctgttacag----------------------------
 || | |||||||||||||||||||||||||||| | ||||||||||||||||| |   | || || || |||||  |||| ||   |||||| || |  ||    |||| |  |  | |  |  | | | ||  |||      |  |  |    |||  ||       |||  ||  |||       ||  |  ||  |                             
GGAGAACTTCAATGATGTCTACATTGTCTATGAGCTCATGGACACTGATCTTCACCACCTTCTTCGATCAAACCAGCCACTAACAGATGATCACTGTCAGgtctcactctattcttgtttgtttctgtattaaaccatctcttcgttatccatcaattcaattcaagcactaaataactgtaagttttctctccattctaacacatccccttcttttttttttttgcag

upper sequence: AT2G46070.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G47140.1 (Glycine max), 5'ss of exon 3
AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctctgtgttgttctaatcatttgtaaagtcatggaactctctgatttgatctttattctatttacttgtcttcctgttacag----------------------
 |||| |||||||||||| |||||||| |||||||||||||| |||||||| || | |||  | || || || |||  | ||||   |||||| || || || ||            | | | ||||| |     |||    || |   |||| || | ||   |||| |    |||  |  |||                         
-GATAACTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGATCCAATCAACAATTGACTGATGATCATTGTCGGGttagc---------actattaccatttctttttgcatatgccttttaaatttaatgtctaccatattgaaagatctctcgattattcttctttttagtattatcgccaa

upper sequence: AT2G46070.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G39190.1 (Glycine max), 5'ss of exon 3
AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaag-----------tctctgtgttgttctaatcatttgtaaagtc-atggaactctctgatttgatctttattctatttacttgtcttcctgttacag
  ||| ||||||||| || |||||||| |||||||||||||| |||||||| || | |||  | |  || || |||  | ||||   |||||| || || || ||           | ||| | |   | |     ||  ||| ||| |    | |    ||| |     |||||||  ||  | || ||  ||  | | 
GTATAACTTCAATGACGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCAATCCAATCAACAATTGACTGATGATCATTGTCGGgttagcactataaccatttctttttgcatatgccttttattaatgtctaccatattaaaagatctataggttattcttctttttagtattattgccaaac

upper sequence: AT2G46070.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G03670.1 (Glycine max), 5'ss of exon 3
AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctctgtgttgttctaatcatttg----taaagtcatggaactctctgatttgatctttatt-------ctatttacttgtcttcctgttacag-
 || | |||||||||||| ||| |||| | ||||||||||||||| ||||| || | |||  | ||||| || ||   | ||||   |||||| || || || ||    |    |  | | | ||| ||    | ||   |   |  |    || || ||   || |          || |  | |  |||| |    | 
GGAAAACTTCAATGATGTGTACCTTGTTTCTGAGTTAATGGACACAGATCTGCATCAAATAATTCGTTCCAATCAGCAATTGACTGATGATCATTGTCGGgttagaactttaactacttttagcatatgacttttaatctacttagttgaaagactttataactaatgggttggtggttaatgtattctcctttggttgt

upper sequence: AT2G46070.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA07G07270.1 (Glycine max), 5'ss of exon 3
AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctctgtgttgttctaatcatttg---taaagtcatgg--aactctctgatttgatctttattctatttacttgtct-tcctgttacag------
 || | |||||||||||| ||| |||| | ||||||||||||||| ||||| || | |||  | |||||||| ||   | ||||   |||||| || || || ||    |    |  | | | ||| ||   |  | ||||    |  |    || || ||   || |   ||   | || | ||||  |   |      
GGAAAACTTCAATGATGTGTACCTTGTTTCTGAGTTAATGGACACAGATCTGCATCAAATAATACGTTCTAATCAGCAATTGACTGATGATCATTGTCGGgttagcactttaactacttttagcatatgacttttaatcatacttagttgaaagactttatagctaatgggttggttagtgtatcctcctttggctgtat

upper sequence: AT2G46070.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv15s0046g02010.t01 (Vitis vinifera), 5'ss of exon 3
AGATATCTTCAATGATGTCTACATTGTCTATGAGTTAATGGACACTGATCTTCAGCGAATCCTCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctctgtgttgttctaat---------catttgtaaagtc---atggaactctctgatttgatctttattctatttact-tgtcttcctgttacag
 || | ||||||||||||||||||||| ||||| ||||||||||||||||| || |  ||  | ||||| |||||| ||||||    ||| || ||||| ||  | | |       || || |          || | ||   |    |   | | || ||| |||   ||  |  | |||||| | ||  ||  || |  
GGAGAACTTCAATGATGTCTACATTGTTTATGAATTAATGGACACTGATCTGCATCAGATAATACGTTCCAACCAACCACTGAATGATGACCACTGCCGGgtttggcaccacaaacttttattggagcactttatctatatcattgcaacaaatcactttgaattgtcattgctcatgtttactatttcagcccattgcc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877463|gb|AU238294.1|AU238294
EST:     TCAGCGAATCCTCCCGTTCTAACCAAACACTGACCAGTGATCAATGCCGT                         TTCCTAGTATACCAGC
genomic: TCAGCGAATCCTCC-GTTCTAACCAAACACTGACCAGTGATCAATGCCGTgtaagtctct ... cctgttacagTTCCTAGTATACCAGC