1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacaaacaacacaaagatccttaaaacattcatgtggttttttgcagtttgcttttggcttatcaattagacctgcatgtgttgtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCAAAGAACCGGTCTGTTCGACTCCTTTCAGCTTTGATTTCGAACATCCTTC
species | Arabidopsis thaliana |
transcript | AT2G46070.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAG TCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCAEST: gi|125041654|gb|EL113923.1|EL113923
genomic: CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAGgtaacaaaca ... gtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
EST: CTTTGATCCTAACCGGCGCATCTCAG TCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCAEST: gi|19797765|gb|AU229451.1|AU229451
genomic: CTTTGATCCTAACCGGCGCATCTCAGgtaacaaaca ... gtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
EST: CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAA TCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
genomic: CGATTTGCTTGAGAGAATGCTCGTCTTTGATCCTAACCGGCGCATCTCAGgtaacaaaca ... gtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCA
tttttgcagtttgcttttggcttatcaattagacctgcatgtgttgtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCAAAGAACCGGTCTGTTCGACTCCTTTCAGCTTTGATTTCGAACATCCTTC
ttatcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaaacaacacaaagatccttaaaacattcatgtggttttttgcagtttgcttttggcttatcaattagacctgcatgtgttgtgtgtgtagTCGATGAAGCCCTTGGCCATGCTTACCTATCACCGCACCATGATGTGGCCAAAGAACCGGTCTGTTCGACTCCTTTCAGCTTTGATTTCGAACATCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT