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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtgcacaaccgcaaccttactattttttaaatctaaagtaaacgaagcttttttcttgttttgatgaatcaaaatctgctgcagtgcagATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACT

Basic information

species Arabidopsis thaliana
transcript AT2G43080.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163968784|gb|ES195042.1|ES195042
EST:     TTCAAGTTCTAAG                         ATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACAC
genomic: TTCAAGTTCTAAGgtgcgtgcac ... tgcagtgcagATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACAC
EST: gi|124937225|gb|EL014020.1|EL014020
EST:     GTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAG                         ATATGAGCCGCAGCAGTTTTACAAACC
genomic: GTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGgtgcgtgcac ... tgcagtgcagATATGAGCCGCAGCAGTTTTACAAACC
EST: gi|19877702|gb|AU238533.1|AU238533
EST:     GTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAG                         ATATGAGCCGCAGCAGTTTTACA
genomic: GTCTTTTCTCAAGTACCAGCGGAAAATGGAGAACTTATTCAAGTTCTAAGgtgcgtgcac ... tgcagtgcagATATGAGCCGCAGCAGTTTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtaaacgaagcttttttcttgttttgatgaatcaaaatctgctgcagtgcagATATGAGCCGCAGCAGTTTTACAAACCACATCACGATTACTTTGCTGACACT
              ttttttcttgtttt  TA-rich tract