1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttactacaatgaagagatgatccccttttggattttctattgcttgttttgttgttgtggtgtccttttgatttctaaattctttctccttcttattcagGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCTACGAG
species | Arabidopsis thaliana |
transcript | AT2G43080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG GAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCEST: gi|163987073|gb|ES031933.1|ES031933
genomic: GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGgtaactcctc ... tcttattcagGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATC
EST: CGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG GAACTGGATTTTCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCEST: gi|19877702|gb|AU238533.1|AU238533
genomic: CGGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGgtaactcctc ... tcttattcagGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATC
EST: GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG GAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATC
genomic: GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGgtaactcctc ... tcttattcagGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATC
gttttgttgttgtggtgtccttttgatttctaaattctttctccttcttattcagGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCTACGAG
ttctaaa putative branch site (score: 2)
tttctaaattctttct CT-rich tract
ttttgatttctaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactacaatgaagagatgatccccttttggattttctattgcttgttttgttgttgtggtgtccttttgatttctaaattctttctccttcttattcagGAACTGGATTTCCGTCTCTAAGAGGACTTCGAGGACAGAACACCCGCTATCTACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- actacaa
- - - - - gaagaga
- - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctcc