Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTTATTTTGATCGGAGATCGAGATCAGCTAGACATGGCTCCTGCCATGAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGgtactttctctctatttatagtcctctacatttgatttttaattttggtcttcaaagtttatatctttttttttgttttctctcggccaaattgactctgtgagaaattgaaacggctctttcgtaaactcatggagattgtgtttctcttttgttcctggaatctgcag

Basic information

species Arabidopsis thaliana
transcript AT2G43080.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301503200|gb|HO208740.1|HO208740
EST:     GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCG                         GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
genomic: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGgtactttctc ... gaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
EST: gi|164007281|gb|EL993462.1|EL993462
EST:     GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCG                         GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAA
genomic: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGgtactttctc ... gaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAA
EST: gi|19877702|gb|AU238533.1|AU238533
EST:     GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCG                         GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
genomic: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGgtactttctc ... gaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG