1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtactttctctctatttatagtcctctacatttgatttttaattttggtcttcaaagtttatatctttttttttgttttctctcggccaaattgactctgtgagaaattgaaacggctctttcgtaaactcatggagattgtgtttctcttttgttcctggaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
species | Arabidopsis thaliana |
transcript | AT2G43080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCG GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGEST: gi|164007281|gb|EL993462.1|EL993462
genomic: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGgtactttctc ... gaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
EST: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCG GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAAEST: gi|19877702|gb|AU238533.1|AU238533
genomic: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGgtactttctc ... gaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACGGAA
EST: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCG GTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
genomic: GAAGATCGTCTTCGGTCTCTTGACATTTGTCACTGTCGGAATGGTCATCGgtactttctc ... gaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
gctctttcgtaaactcatggagattgtgtttctcttttgttcctggaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttctctctatttatagtcctctacatttgatttttaattttggtcttcaaagtttatatctttttttttgttttctctcggccaaattgactctgtgagaaattgaaacggctctttcgtaaactcatggagattgtgtttctcttttgttcctggaatctgcagGTTCCTTGTTACAATTGGCCTTTATTAATAGATTGGAAGATTCGTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA